miRBase entry: gga-mir-3532

Stem-loop gga-mir-3532


Accession
MI0015385
Description
Gallus gallus gga-mir-3532 precursor miRNA

Literature search
0 open access papers mention gga-mir-3532
(0 sentences)

Sequence

1363 reads, 16 reads per million, 5 experiments
ugugcuucucacGUUGCACUGCAGCUGCUCUUGGgcuuaauuaaucugacccUUGGAGGCUGCAGUGUCAUGGUguaaagcaca
(((((((..(((..(((((((((((..((((.(((.(((.......))))))..))))))))))))).))..)))..)))))))

Structure
       cu   GU  -         UG    -U   c   au 
ugugcuu  cac  UG CACUGCAGC  CUCU  GGg uua  u
|||||||  |||  || |||||||||  ||||  ||| |||  a
acacgaa  gUG  AC GUGACGUCG  GAGG  ccc agu  a
       au   GU  U         --    UU   -   cu 


Annotation confidence Not enough data
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Genome context
chr5: 32991425-32991508 [-]

Database links

Mature gga-miR-3532-3p

Accession MIMAT0016383
Description Gallus gallus gga-miR-3532-3p mature miRNA
Sequence 53 - UUGGAGGCUGCAGUGUCAUGGU - 74
Evidence experimental
Illumina [1-2]

Mature gga-miR-3532-5p

Accession MIMAT0027031
Description Gallus gallus gga-miR-3532-5p mature miRNA
Sequence 13 - GUUGCACUGCAGCUGCUCUUGG - 34
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 19891781
    Identification of differentially expressed miRNAs in chicken lung and trachea with avian influenza virus infection by a deep sequencing approach
    Wang Y, Brahmakshatriya V, Zhu H, Lupiani B, Reddy SM, Yoon BJ, Gunaratne PH, Kim JH, Chen R, Wang J, Zhou H
    BMC Genomics (2009) 10:512

  2. PubMed ID: 23034410
    Birth and expression evolution of mammalian microRNA genes
    "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
    "Genome Res (2013) 23:34-45