Stem-loop rno-mir-3543-1

Accession

MI0015397

Description

Rattus norvegicus rno-mir-3543-1 precursor miRNA

Gene family

MIPF0002097; mir-3543

Sequence

5025132 reads, 0 reads per million, 487 experiments

ugauucaaacCAGGAGUCGAGUGAUGGUUCAAAccacgaguuugacaaugguucaaaccaugagucgagcugugguucaaaccaagagucaaucgacguuucaaaccuggaguca
(((((....(((((.(((((.((((((((..((((((.((((((((.(((((....)))))..))))))))))))))..)))))....))).)))))........))))))))))

Structure

     caaa     -------A     G   ----     CA      g        -a     u 
ugauu    cCAGG        GUCGA UGA    UGGUU  AAccac aguuugac  auggu c
|||||    |||||        ||||| |||    |||||  |||||| ||||||||  |||||  
acuga    ggucc        cagcu acu    accaa  uuggug ucgagcug  uacca a
     ----     aaacuuug     a   gaga     ac      -        ag     a 

Annotation confidence Not enough data

Genome context

chr6: 133715345-133715459 [-]

Clustered miRNAs

11 other miRNAs are < 10 kb from rno-mir-3543-1

Mature rno-miR-3543

• Accession: MIMAT0017797
• Description: Rattus norvegicus rno-miR-3543 mature miRNA
• Sequence: 11 - CAGGAGUCGAGUGAUGGUUCAAA - 33
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249