Stem-loop rno-mir-3544

Accession

MI0015398

Description

Rattus norvegicus rno-mir-3544 precursor miRNA

Sequence

217 reads, 1 reads per million, 59 experiments

cgguugaagggggugaagaaaggcaucauauaggagcugaauggcugugcaaucAACUCCUGCAUGACGCCGUUCCCaccccccaacu
.(((((..(((((((..(((.(((.((((.((((((.(((.((......)).))).)))))).)))).))).))).))))))))))))

Structure

c     aa       aa   a   a    a      c   a  gc 
 gguug  gggggug  gaa ggc ucau uaggag uga ug  u
 |||||  |||||||  ||| ||| |||| |||||| ||| ||   
 ucaac  cccccaC  CUU CCG AGUA GUCCUC Acu ac  g
-     --       -C   G   C    C      A   a  gu 

Annotation confidence Not enough data

Genome context

chr6: 133705932-133706019 [-]

Clustered miRNAs

9 other miRNAs are < 10 kb from rno-mir-3544

Mature rno-miR-3544

• Accession: MIMAT0017798
• Description: Rattus norvegicus rno-miR-3544 mature miRNA
• Sequence: 55 - AACUCCUGCAUGACGCCGUUCCC - 77
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249