Stem-loop sequence rno-mir-203b

Accession

MI0015399 (change log)

Previous IDs

rno-mir-3545

Description

Rattus norvegicus miR-203b stem-loop

Gene family

MIPF0000108; mir-203

Literature search

29 open access papers mention rno-mir-203b
(219 sentences)

Stem-loop

      g  gcc c   c u       g           c  a    u    -  a  g gc 
5' gcu uc   g ugc g gcgcgcc ggucuaguggu cu aaca uuca ca uu c  u
   ||| ||   | ||| | ||||||| ||||||||||| || |||| |||| || || |   
3' cga ag   c acg c cgcgcgg ccaggucacca ga uugu aagu gu aa g  a
      -  aca -   u -       a           a  a    c    u  c  - ac 

Deep sequencing

49539 reads, 44.9 reads per million, 405 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr6: 136704947-136705061 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-203b

• rno-mir-203a: chr6: 136704961-136705057 [+]
• rno-mir-203b: chr6: 136704947-136705061 [-]

Database links

• EntrezGene:Mir3545
• miRBase Tracker:MI0015399

Mature sequence rno-miR-203b-5p

• Accession: MIMAT0017799
• Previous IDs: rno-miR-3545-5p
• Sequence: 31 - agugguccuaaacauuucac - 50
• Deep sequencing: 16 reads, 15 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-203b-5p
  • miRDB:rno-miR-203b-5p

Mature sequence rno-miR-203b-3p

• Accession: MIMAT0017800
• Previous IDs: rno-miR-3545-3p
• Sequence: 69 - uugaacuguuaagaaccacugg - 90
• Deep sequencing: 49461 reads, 405 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-203b-3p
  • miRDB:rno-miR-203b-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).