Accession
MI0015400
Description
Rattus norvegicus
rno-mir-3546 precursor miRNA
Gene family
MIPF0000178;
mir-208
Sequence
24259
reads,
15
reads per million, 192 experiments
ggcugagagacgauagcuccucugaccaacaagcuuuuugcucgucuuauacgugagagucagguAUAACCCGGGCCAAAAGCUCACccgucaaaggaaguaagcaagggucagcc
((((((.........((((((.((((.....(((((((.(((((..((((((.(((...))).))))))..))))).))))))).....)))).))).))).........))))))
((((((.........((((((.((((.....(((((((.(((((..((((((.(((...))).))))))..))))).))))))).....)))).))).))).........))))))
Structure
gagacgaua - c caaca u uc g g
ggcuga gcu ccu ugac agcuuuu gcucg uuauac uga
|||||| ||| ||| |||| ||||||| ||||| |||||| ||| a
ccgacu uga gga acug UCGAAAA CGGGC AAUAug acu
gggaacgaa a a ccCAC C CC g g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
chr15: 33613435-33613550 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3546
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature rno-miR-3546
| Accession | MIMAT0017801 |
| Description | Rattus norvegicus rno-miR-3546 mature miRNA |
| Sequence | 66 - AUAACCCGGGCCAAAAGCUCAC - 87 |
| Evidence |
experimental
SOLiD [1] |
References
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