Stem-loop sequence rno-mir-3547

AccessionMI0015401 (change log)
DescriptionRattus norvegicus miR-3547 stem-loop
Gene family MIPF0001788; mir-3547
Literature search

1 open access papers mention rno-mir-3547
(1 sentences)

Stem-loop 
      a  u   agg     a         g  c      uguacccau   a     au 
5' cug cu cca   uggga gaggggugg gc cgggac         gug ggacu  u
   ||| || |||   ||||| ||||||||| || ||||||         ||| |||||  c
3' gac gg ggu   acucu cuccccacc cg gucuug         cgc ccuga  u
      -  u   -ag     -         a  a      -----uucu   -     gu
Get sequence
Deep sequencing
4994 reads, 2.65 reads per million, 226 experiments
Confidence Annotation confidence: not enough data
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Genome context
Coordinates (Rnor_6.0; GCA_000001895.4) Overlapping transcripts
chr10: 14603134-14603243 [-]
sense
ENSRNOT00000073112 ; Baiap3-202; exon 24
ENSRNOT00000024072 ; Baiap3-201; exon 25
Database links

Mature sequence rno-miR-3547

Accession MIMAT0017802
Sequence

80 -  

ugagcaccaccccucucucagau

 - 102

Get sequence
Deep sequencing4975 reads, 223 experiments
Evidence experimental; SOLiD [1]
Predicted targets

References

1
PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).