miRBase entry: rno-mir-449c

Stem-loop rno-mir-449c


Accession
MI0015402
Description
Rattus norvegicus rno-mir-449c precursor miRNA
Gene family
MIPF0000133; mir-449

Literature search
7 open access papers mention rno-mir-449c
(15 sentences)

Sequence

2241 reads, 48 reads per million, 214 experiments
aagcgugggugugucagacAGGCAGUGCAUUGCUAGCUGGcuguUAGAACUUCGUCCCAACaguggcuagcugcacuacccucugcugcacuuagaagc
..((.((((((((.((((..((.((((((..((((((..((((((.(.((...)).).)))))).)))))))))))).)).)))).))))))))...))

Structure
aa  --g        u    cA  C      UU      UG      A A  U 
  gc   ugggugug caga  GG AGUGCA  GCUAGC  GcuguU G AC  
  ||   |||||||| ||||  || ||||||  ||||||  |||||| | || U
  cg   auucacgu gucu  cc ucacgu  cgaucg  ugaCAA C UG  
--  aag        c    -c  a      --      -g      C C  C 


Annotation confidence Not enough data
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Genome context
chr2: 44896066-44896164 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-449c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-449c-5p

Accession MIMAT0017803
Description Rattus norvegicus rno-miR-449c-5p mature miRNA
Sequence 20 - AGGCAGUGCAUUGCUAGCUGG - 40
Evidence experimental
SOLiD [1]

Mature rno-miR-449c-3p

Accession MIMAT0017804
Description Rattus norvegicus rno-miR-449c-3p mature miRNA
Sequence 45 - UAGAACUUCGUCCCAAC - 61
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249