miRBase entry: rno-mir-3550

Stem-loop rno-mir-3550


Accession
MI0015406
Description
Rattus norvegicus rno-mir-3550 precursor miRNA

Literature search
1 open access papers mention rno-mir-3550
(1 sentences)

Sequence

48 reads, 4 reads per million, 32 experiments
cuucuggagugccuggugaggggugguuugagcaguguggggcaugggguggcccucacugggcacaccaaccaagCCGAGCCCAUCCCUGCCCUAGgaauucaacccagaaga
(((((((..(((((((..((((((((..........((..(((.(((((((((((.....)))).))))..))).)))..))))))))))..)).)))....))..))))))).

Structure
-       ag  ----   -  ug        uuugagcagu  gg   a   --    -    u 
 cuucugg  ug    ccu gg  aggggugg          gu  ggc ugg  ggug gccc c
 |||||||  ||    ||| ||  ||||||||          ||  ||| |||  |||| |||| a
 gaagacc  ac    gGA CC  UCCCUACC          CG  CCg acc  ccac cggg c
a       ca  uuaa   U  CG        ----------  AG   a   aa    a    u 


Annotation confidence Not enough data
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Genome context
chr19: 26041428-26041541 [-]

Database links

Mature rno-miR-3550

Accession MIMAT0017808
Description Rattus norvegicus rno-miR-3550 mature miRNA
Sequence 77 - CCGAGCCCAUCCCUGCCCUAG - 97
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249