miRBase entry: rno-mir-344b-2

Stem-loop rno-mir-344b-2


Accession
MI0015408
Description
Rattus norvegicus rno-mir-344b-2 precursor miRNA
Gene family
MIPF0000267; mir-344

Literature search
9 open access papers mention rno-mir-344b-2
(39 sentences)

Sequence

1380 reads, 26 reads per million, 78 experiments
ugaucAGUCAGGCUGCUGGUUAUAUUCcaggacuucucugguccugGGUAUAACCAAAGCCCGACUGUuaa
(((.(((((.((((..(((((((((.((((((((.....))))))))))))))))).)))).)))))))).

Structure
-   u     A    GC         U        u 
 uga cAGUC GGCU  UGGUUAUAU Ccaggacu c
 ||| ||||| ||||  ||||||||| |||||||| u
 auU GUCAG CCGA  ACCAAUAUG Gguccugg c
a   -     C    -A         -        u 


Annotation confidence High
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Genome context
chr1: 121185891-121185961 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-344b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-344b-5p

Accession MIMAT0017811
Description Rattus norvegicus rno-miR-344b-5p mature miRNA
Sequence 6 - AGUCAGGCUGCUGGUUAUAUUC - 27
Evidence experimental
SOLiD [1]

Mature rno-miR-344b-3p

Accession MIMAT0017812
Description Rattus norvegicus rno-miR-344b-3p mature miRNA
Sequence 47 - GGUAUAACCAAAGCCCGACUGU - 68
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249