miRBase entry: rno-mir-3553

Stem-loop rno-mir-3553


Accession
MI0015410
Description
Rattus norvegicus rno-mir-3553 precursor miRNA

Literature search
1 open access papers mention rno-mir-3553
(1 sentences)

Sequence

489895 reads, 1 reads per million, 491 experiments
cggaucugucucugcucuguuuauggcccuucgguaauucacugaccgagacuguucaCAGUGAAUUCUACCAGUGCCAUAcacaggacaggagucacacucucug
.(((..((.((((..(((((.((((((.((..((((((((((((...(((....))).))))))))..)))))).)))))).)))))...)))).))...)))...

Structure
--c   -uc  u    -gc     u      c  uc    --        acc   a 
   gga   ug cucu   ucugu uauggc cu  ggua  auucacug   gag c
   |||   || ||||   ||||| |||||| ||  ||||  ||||||||   |||  
   ucu   ac gagg   ggaca AUACCG GA  CCAU  UAAGUGAC   cuu u
guc   cac  u    aca     c      U  --    CU        --a   g 


Annotation confidence Not enough data
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Genome context
chr4: 57463572-57463677 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from rno-mir-3553
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3553

Accession MIMAT0017814
Description Rattus norvegicus rno-miR-3553 mature miRNA
Sequence 59 - CAGUGAAUUCUACCAGUGCCAUA - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249