Stem-loop rno-mir-31b

Accession

MI0015412

Description

Rattus norvegicus rno-mir-31b precursor miRNA

Gene family

MIPF0000064; mir-31

Literature search

28 open access papers mention rno-mir-31b
(258 sentences)

Sequence

286985 reads, 0 reads per million, 484 experiments

uggccaagcugcugucagacaggaaagauggcaauauguuggcauagcagguucucaguucaacagCUAUGCCAGCAUCUUGCCUccucuccaguuccaaguuucaggagcaauacca
(((....(((.(((...(((.(((.((..(((((.(((((((((((((..(((........))).))))))))))))).)))))..)).))).)))........))).)))....)))

Structure

   ccaa   g   -----uca   a   a  au     u             ag   cuc 
ugg    gcu cug        gac gga ag  ggcaa auguuggcauagc  guu   a
|||    ||| |||        ||| ||| ||  ||||| |||||||||||||  |||    
acc    cga gac        uug ccu uc  CCGUU UACGACCGUAUCg  caa   g
   auaa   g   uuugaacc   a   c  cU     C             -a   cuu 

Annotation confidence Not enough data

Genome context

chr5: 107206509-107206626 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-31b

Mature rno-miR-31b

• Accession: MIMAT0017816
• Description: Rattus norvegicus rno-miR-31b mature miRNA
• Sequence: 67 - CUAUGCCAGCAUCUUGCCU - 85
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249