miRBase entry: rno-mir-3557

Stem-loop rno-mir-3557


Accession
MI0015415
Description
Rattus norvegicus rno-mir-3557 precursor miRNA
Gene family
MIPF0000168; mir-378

Literature search
1 open access papers mention rno-mir-3557
(1 sentences)

Sequence

11321418 reads, 4 reads per million, 508 experiments
agcggggaaggugacuccacucagGCCUUCUGACUCCAAGUCCAGUgcuauuucgagguaacACACAGGACCUGGAGUCAGGAGcccuggguggcucugucacccccuggcug
(((.(((..((((((.(((((((((.((((((((((((.((((.(((.((((....)))).)))...)))).)))))))))))).)))))))))....)))))).))).))).

Structure
-   g   aa      ---u         C            A    --A   c    u 
 agc ggg  ggugac    ccacucagG CUUCUGACUCCA GUCC   GUg uauu c
 ||| |||  ||||||    ||||||||| |||||||||||| ||||   ||| ||||  
 ucg ucc  ccacug    ggugggucc GAGGACUGAGGU CAGG   CAc augg g
g   g   -c      ucuc         c            C    ACA   a    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr18: 56726128-56726240 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3557
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3557-5p

Accession MIMAT0017819
Description Rattus norvegicus rno-miR-3557-5p mature miRNA
Sequence 25 - GCCUUCUGACUCCAAGUCCAGU - 46
Evidence experimental
SOLiD [1]

Mature rno-miR-3557-3p

Accession MIMAT0017820
Description Rattus norvegicus rno-miR-3557-3p mature miRNA
Sequence 63 - ACACAGGACCUGGAGUCAGGAG - 84
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249