miRBase entry: rno-mir-3558

Stem-loop rno-mir-3558


Accession
MI0015420
Description
Rattus norvegicus rno-mir-3558 precursor miRNA


Sequence

380 reads, 9 reads per million, 177 experiments
gcagcuggaccuucacccgggcuguCCAUAGAAGUCAUCCCACAGUGCCuucaaggagggcaucggcACUGUGGAGGGUUUCUAUGUcagccugagugguacagauccaugcug
.((((((((.((((((.(((((((..((((((((((...((((((((((...............))))))))))..)))))))))).))))))).))))...)).)))).))))

Structure
g    -    c  ---    c       uC          AUC          uucaag 
 cagc ugga cu   ucac cgggcug  CAUAGAAGUC   CCACAGUGCC      g
 |||| |||| ||   |||| |||||||  ||||||||||   ||||||||||      a
 gucg accu ga   ggug guccgac  GUAUCUUUGG   GGUGUCAcgg      g
-    u    a  cau    a       -U          -GA          cuacgg 


Annotation confidence High
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Genome context
chr6: 10992691-10992804 [+]

Database links

Mature rno-miR-3558-5p

Accession MIMAT0017825
Description Rattus norvegicus rno-miR-3558-5p mature miRNA
Sequence 26 - CCAUAGAAGUCAUCCCACAGUGCC - 49
Evidence experimental
SOLiD [1]

Mature rno-miR-3558-3p

Accession MIMAT0017826
Description Rattus norvegicus rno-miR-3558-3p mature miRNA
Sequence 68 - ACUGUGGAGGGUUUCUAUGU - 87
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249