miRBase entry: rno-mir-3560

Stem-loop rno-mir-3560


Accession
MI0015422
Description
Rattus norvegicus rno-mir-3560 precursor miRNA

Literature search
1 open access papers mention rno-mir-3560
(4 sentences)

Sequence

9122 reads, 0 reads per million, 453 experiments
ccucacaugcagaccaggcuuaccuucccCAAAUCCUUGCCCGGGUGCAUUgcauacaaauagcauuuucacccagggacaaaggauuagagaggacgagcagagcagaagg
(((....(((.......((((..((((.(..((((((((((((((((...(((.........)))....))))).))).).))))))).).))))..))))...)))..)))

Structure
   caca   agaccag    ac    c CA       - -   -     -CAU   aua 
ccu    ugc       gcuu  cuuc c  AAUCCUU G CCC GGGUG    Ugc   c
|||    |||       ||||  |||| |  ||||||| | ||| |||||    |||   a
gga    acg       cgag  ggag g  uuaggaa c ggg cccac    acg   a
   --ag   ----aga    ca    a -a       a a   a     uuuu   aua 


Annotation confidence Not enough data
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Genome context
chrX: 16117863-16117974 [-]
Clustered miRNAs
5 other miRNAs are < 10 kb from rno-mir-3560
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3560

Accession MIMAT0017829
Description Rattus norvegicus rno-miR-3560 mature miRNA
Sequence 30 - CAAAUCCUUGCCCGGGUGCAUU - 51
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249