miRBase entry: rno-mir-9b-3

Stem-loop rno-mir-9b-3


Accession
MI0015426
Description
Rattus norvegicus rno-mir-9b-3 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
71 open access papers mention rno-mir-9b-3
(630 sentences)

Sequence

5579902 reads, 7 reads per million, 493 experiments
gcacgcagaaguuguuagagucauuucuacuUUCGGUUAUCUAGCUUUAUgacggcucuguggcacucAUACAGCUAGAUAACCAAagagagaaacgggccucccauucgccggc
((.((..(((..((..((.(((.(((((.((((.((((((((((((.(((((..(((....)))..))))).))))))))))))))))..)))))..)))))..)))))..))))

Structure
  a  ca   gu  uu  a   -a     -a    C            U     cg   c 
gc cg  gaa  ug  ag guc  uuucu  cuUU GGUUAUCUAGCU UAUga  gcu u
|| ||  |||  ||  || |||  |||||  |||| |||||||||||| |||||  |||  
cg gc  cuu  ac  uc cgg  aaaga  gaAA CCAAUAGAUCGA AUAcu  cgg g
  -  cg   --  cc  -   gc     ga    -            C     ca   u 


Annotation confidence Not enough data
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Genome context
chr1: 141229342-141229456 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-9b-3
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-9b-5p

Accession MIMAT0017835
Description Rattus norvegicus rno-miR-9b-5p mature miRNA
Sequence 32 - UUCGGUUAUCUAGCUUUAU - 50
Evidence experimental
SOLiD [1]

Mature rno-miR-9b-3p

Accession MIMAT0017836
Description Rattus norvegicus rno-miR-9b-3p mature miRNA
Sequence 69 - AUACAGCUAGAUAACCAA - 86
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249