miRBase entry: rno-mir-3564

Stem-loop rno-mir-3564


Accession
MI0015427
Description
Rattus norvegicus rno-mir-3564 precursor miRNA

Literature search
1 open access papers mention rno-mir-3564
(1 sentences)

Sequence

2 reads, 0 reads per million, 2 experiments
guuccaaacagcuucacuauuaucugucuucuguaucccucaagcuuuccccagugaacacagcacccUGGGAAAUGCAAAGAGGGAAGacagagaggagcaugggguggga
.(((((..(((((((.......(((((((......((((((..((((((((..(((.......)))...)))))).))...)))))))))))))..))))).))...)))))

Structure
g     -aa  -     acuauua       ucugua      -aa  -      -ca   aa 
 uucca   ca gcuuc       ucugucu      ucccuc   gc uuuccc   gug  c
 |||||   || |||||       |||||||      ||||||   || ||||||   |||  a
 agggu   gu cgagg       agacaGA      AGGGAG   CG AAAGGG   cac  c
-     ggg  a     -----ag       ------      AAA  U      Ucc   ga 


Annotation confidence Not enough data
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Genome context
chr19: 54632008-54632119 [+]

Database links

Mature rno-miR-3564

Accession MIMAT0017837
Description Rattus norvegicus rno-miR-3564 mature miRNA
Sequence 69 - UGGGAAAUGCAAAGAGGGAAG - 89
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249