miRBase entry: rno-mir-3065

Stem-loop rno-mir-3065


Accession
MI0015429
Description
Rattus norvegicus rno-mir-3065 precursor miRNA
Gene family
MIPF0001105; mir-3065

Literature search
1 open access papers mention rno-mir-3065
(1 sentences)

Sequence

885634 reads, 15 reads per million, 485 experiments
gaggcuggcagcugcccucuUCAACAAAAUCACUGAUGCUggagucacugugcacccacUCAGCACCAGGAUAUUGUUGGGGAggacggccugggcagcgucg
((.((((.(.((((.((((((((((((.(((.(((.(((((.(((............)))))))).)))))).)))))))))))).))))...).)))).)).

Structure
-  g    g --a    c            A   A   A     g   cacug 
 ga gcug c   gcug ccucuUCAACAA AUC CUG UGCUg agu     u
 || |||| |   |||| |||||||||||| ||| ||| ||||| |||      
 cu cgac g   cggc ggAGGGGUUGUU UAG GAC ACGAC Uca     g
g  g    g guc    a            A   -   C     -   cccac 


Annotation confidence High
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Genome context
chr10: 109195234-109195336 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-3065
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3065-5p

Accession MIMAT0017839
Description Rattus norvegicus rno-miR-3065-5p mature miRNA
Sequence 21 - UCAACAAAAUCACUGAUGCU - 40
Evidence experimental
SOLiD [1]

Mature rno-miR-3065-3p

Accession MIMAT0017840
Description Rattus norvegicus rno-miR-3065-3p mature miRNA
Sequence 60 - UCAGCACCAGGAUAUUGUUGGGGA - 83
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249