miRBase entry: rno-mir-9b-1

Stem-loop rno-mir-9b-1


Accession
MI0015430
Description
Rattus norvegicus rno-mir-9b-1 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
71 open access papers mention rno-mir-9b-1
(630 sentences)

Sequence

5588679 reads, 8 reads per million, 493 experiments
gcgcaguguaugggguuauuuuuacuUUCGGUUAUCUAGCUUUAUgaagacuccacaccacucAUACAGCUAGAUAACCAAagauaacaaccaaccccgccuccuggc
((.(((....(((((((....(((((((.((((((((((((.(((((..............))))).)))))))))))))))).))).....)))))))....)))))

Structure
  g   ugua       -auuu   -    C            U     agacuc 
gc cag    ugggguu     uua cuUU GGUUAUCUAGCU UAUga      c
|| |||    |||||||     ||| |||| |||||||||||| |||||       
cg guc    gccccaa     aau gaAA CCAAUAGAUCGA AUAcu      a
  -   cucc       ccaac   a    -            C     caccac 


Annotation confidence Not enough data
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Genome context
chr2: 187582790-187582897 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-9b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-9b-5p

Accession MIMAT0017835
Description Rattus norvegicus rno-miR-9b-5p mature miRNA
Sequence 27 - UUCGGUUAUCUAGCUUUAU - 45
Evidence experimental
SOLiD [1]

Mature rno-miR-9b-3p

Accession MIMAT0017836
Description Rattus norvegicus rno-miR-9b-3p mature miRNA
Sequence 64 - AUACAGCUAGAUAACCAA - 81
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249