miRBase entry: rno-mir-216b

Stem-loop rno-mir-216b


Accession
MI0015435
Description
Rattus norvegicus rno-mir-216b precursor miRNA
Gene family
MIPF0000054; mir-216

Literature search
12 open access papers mention rno-mir-216b
(39 sentences)

Sequence

35278 reads, 377 reads per million, 151 experiments
ugcacguuggcagacugggAAAUCUCUGCAGGCAAAUGUGAugucacugaagaaaucaCACACUUACUUGUAGAGAUUcuucagucugacaacaucaagcau
(((..((((.(((((((((.((((((((((((.((.((((((.((......)).))))))...)).)))))))))))).))))))))).)))).....))).

Structure
-   ---ac    g         A            C  --A      g  ac 
 ugc     guug cagacuggg AAUCUCUGCAGG AA   UGUGAu uc  u
 |||     |||| ||||||||| |||||||||||| ||   |||||| ||   
 acg     caac gucugacuu UUAGAGAUGUUC UU   ACacua ag  g
u   aacua    a         c            A  CAC      a  aa 


Annotation confidence Not enough data
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Genome context
chr14: 113101078-113101179 [+]

Database links

Mature rno-miR-216b-5p

Accession MIMAT0017846
Description Rattus norvegicus rno-miR-216b-5p mature miRNA
Sequence 20 - AAAUCUCUGCAGGCAAAUGUGA - 41
Evidence experimental
SOLiD [1]

Mature rno-miR-216b-3p

Accession MIMAT0017847
Description Rattus norvegicus rno-miR-216b-3p mature miRNA
Sequence 59 - CACACUUACUUGUAGAGAUU - 78
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249