Stem-loop rno-mir-216b

Accession

MI0015435

Description

Rattus norvegicus rno-mir-216b precursor miRNA

Literature search

26 open access papers mention rno-mir-216b
(59 sentences)

Sequence

42005 reads, 205.0 reads per million, 159 experiments

ugcacguuggcagacugggAAAUCUCUGCAGGCAAAUGUGAUGucacugaagaaaucACACACUUACUUGUAGAGAUUCUUcagucugacaacaucaagcau
(((..((((.(((((((((.((((((((((((.((.((((((.((......)).))))))...)).)))))))))))).))))))))).)))).....))).

Structure

-   ---ac    g         A            C  --A      G  ac 
 ugc     guug cagacuggg AAUCUCUGCAGG AA   UGUGAU uc  u
 |||     |||| ||||||||| |||||||||||| ||   |||||| ||   
 acg     caac gucugacUU UUAGAGAUGUUC UU   ACAcua ag  g
u   aacua    a         C            A  CAC      a  aa 

Annotation confidence High

Genome context

chr14: 113101078-113101179 [+]

Mature rno-miR-216b-5p

• Accession: MIMAT0017846
• Description: Rattus norvegicus rno-miR-216b-5p mature miRNA
• Sequence: 20 - AAAUCUCUGCAGGCAAAUGUGAUG - 43
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-216b-3p

• Accession: MIMAT0017847
• Description: Rattus norvegicus rno-miR-216b-3p mature miRNA
• Sequence: 58 - ACACACUUACUUGUAGAGAUUCUU - 81
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249