Stem-loop rno-mir-216b

Accession

MI0015435

Description

Rattus norvegicus rno-mir-216b precursor miRNA

Literature search

12 open access papers mention rno-mir-216b
(39 sentences)

Sequence

35244 reads, 175 reads per million, 136 experiments

ugcacguuggcagacugggAAAUCUCUGCAGGCAAAUGUGAugucacugaagaaaucaCACACUUACUUGUAGAGAUUcuucagucugacaacaucaagcau
(((..((((.(((((((((.((((((((((((.((.((((((.((......)).))))))...)).)))))))))))).))))))))).)))).....))).

Structure

-   ---ac    g         A            C  --A      g  ac 
 ugc     guug cagacuggg AAUCUCUGCAGG AA   UGUGAu uc  u
 |||     |||| ||||||||| |||||||||||| ||   |||||| ||   
 acg     caac gucugacuu UUAGAGAUGUUC UU   ACacua ag  g
u   aacua    a         c            A  CAC      a  aa 

Annotation confidence Not enough data

Genome context

chr14: 113101078-113101179 [+]

Mature rno-miR-216b-5p

• Accession: MIMAT0017846
• Description: Rattus norvegicus rno-miR-216b-5p mature miRNA
• Sequence: 20 - AAAUCUCUGCAGGCAAAUGUGA - 41
• Evidence: experimental ; SOLiD [1]

Mature rno-miR-216b-3p

• Accession: MIMAT0017847
• Description: Rattus norvegicus rno-miR-216b-3p mature miRNA
• Sequence: 59 - CACACUUACUUGUAGAGAUU - 78
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249