miRBase entry: rno-mir-9b-2

Stem-loop rno-mir-9b-2


Accession
MI0015439
Description
Rattus norvegicus rno-mir-9b-2 precursor miRNA
Gene family
MIPF0000014; mir-9

Literature search
71 open access papers mention rno-mir-9b-2
(630 sentences)

Sequence

5588703 reads, 8 reads per million, 493 experiments
agcacuccucggugaucuugaaggaguuuuuacuUUCGGUUAUCUAGCUUUAUgaagaccaauacacucAUACAGCUAGAUAACCAAagauaacaacucgcuucccucacaaggcugu
.(((..(((..((((....(((((((((.(((((((.((((((((((((.(((((............))))).)))))))))))))))).))).))))).))))..)))).))).)))

Structure
a   cu   cg    ucuu    -     u   -    C            U     agacc 
 gca  ccu  guga    gaag gaguu uua cuUU GGUUAUCUAGCU UAUga     a
 |||  |||  ||||    |||| ||||| ||| |||| |||||||||||| |||||      
 ugu  gga  cacu    cuuc cucaa aau gaAA CCAAUAGAUCGA AUAcu     a
-   -c   -a    --cc    g     c   a    -            C     cacau 


Annotation confidence Not enough data
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Genome context
chr2: 11884658-11884775 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-9b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-9b-5p

Accession MIMAT0017835
Description Rattus norvegicus rno-miR-9b-5p mature miRNA
Sequence 35 - UUCGGUUAUCUAGCUUUAU - 53
Evidence experimental
SOLiD [1]

Mature rno-miR-9b-3p

Accession MIMAT0017836
Description Rattus norvegicus rno-miR-9b-3p mature miRNA
Sequence 70 - AUACAGCUAGAUAACCAA - 87
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249