miRBase entry: rno-mir-1188

Stem-loop rno-mir-1188


Accession
MI0015443
Description
Rattus norvegicus rno-mir-1188 precursor miRNA
Gene family
MIPF0001188; mir-1188

Literature search
4 open access papers mention rno-mir-1188
(7 sentences)

Sequence

357 reads, 8 reads per million, 84 experiments
gucucucagcUGGUGUGAGGUUGGGCCAGGAugaaacccaaggcucucCGAGGCUCCCCACCACAcccugcugcugaagacu
(((((.((((.((((((..(..(((((.(((.((..(....)..)))))..)))))..)..))))))..))))..).)))).

Structure
-    - -u    -U      AG UU     -A   u  aa c 
 gucu c  cagc  GGUGUG  G  GGGCC  GGA ga  c c
 |||| |  ||||  ||||||  |  |||||  ||| ||  |  
 caga g  gucg  ccACAC  C  CUCGG  Ccu cu  g a
u    a uc    uc      CA CC     AG   -  cg a 


Annotation confidence High
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Genome context
chr6: 133733578-133733659 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-1188
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-1188-5p

Accession MIMAT0017854
Description Rattus norvegicus rno-miR-1188-5p mature miRNA
Sequence 11 - UGGUGUGAGGUUGGGCCAGGA - 31
Evidence experimental
SOLiD [1]

Mature rno-miR-1188-3p

Accession MIMAT0017855
Description Rattus norvegicus rno-miR-1188-3p mature miRNA
Sequence 49 - CGAGGCUCCCCACCACA - 65
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249