miRBase entry: rno-mir-3575

Stem-loop rno-mir-3575


Accession
MI0015447
Description
Rattus norvegicus rno-mir-3575 precursor miRNA
Gene family
MIPF0000019; mir-8


Sequence

117548 reads, 0 reads per million, 415 experiments
uggacgccgaugacacaggggcaggggccuccaucauuacccggcaguauuagagacucccaaccagcacccaaacACUGCUGGGUAAGACGAGggccccuacccaaccagucca
(((((.............(((.((((((((.(.((.((((((((((((............................)))))))))))))).).)))))))).))).....)))))

Structure
     gccgaugacacag   c        c a  a            auuagagacuccc 
uggac             ggg aggggccu c uc uuacccggcagu             a
|||||             ||| |||||||| | || ||||||||||||              
accug             ccc uccccggG G AG AAUGGGUCGUCA             a
     --------accaa   a        A C  -            caaacccacgacc 


Annotation confidence Not enough data
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Genome context
chr4: 157236759-157236873 [+]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3575
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3575

Accession MIMAT0017861
Description Rattus norvegicus rno-miR-3575 mature miRNA
Sequence 77 - ACUGCUGGGUAAGACGAG - 94
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249