miRBase entry: rno-mir-3576

Stem-loop rno-mir-3576


Accession
MI0015448
Description
Rattus norvegicus rno-mir-3576 precursor miRNA
Gene family
MIPF0001166; mir-3578

Literature search
1 open access papers mention rno-mir-3576
(1 sentences)

Sequence

reads, None reads per million, experiments
uccgccagggcaguauuugauacucgaaaagaaauuacccuuguaugauucauccaaaagagcaaACACACCAAGGAUAAUUUCUCCucaaguaugaaacaguagcacagcagga
(((((....(((.(.(((.(((((.((..((((((((.(((((..((.....((.....)).....))...))))).))))))))..)).))))).))).).).))...)).)))

Structure
   -  cagg  - g a   g     c  aa        c     -ua  auuca  c 
ucc gc    gc a u uuu auacu ga  agaaauua ccuug   ug     uc a
||| ||    || | | ||| ||||| ||  |||||||| |||||   ||     || a
agg cg    cg u a aaa uauga cu  UCUUUAAU GGAAC   AC     ag a
   a  -aca  a g c   g     a  CC        A     CAC  Aaacg  a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr6: 133877812-133877926 [-]
Clustered miRNAs
17 other miRNAs are < 10 kb from rno-mir-3576
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3576

Accession MIMAT0017862
Description Rattus norvegicus rno-miR-3576 mature miRNA
Sequence 66 - ACACACCAAGGAUAAUUUCUCC - 87
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249