miRBase entry: rno-mir-3584-1

Stem-loop rno-mir-3584-1


Accession
MI0015458
Description
Rattus norvegicus rno-mir-3584-1 precursor miRNA
Gene family
MIPF0002006; mir-3584

Literature search
4 open access papers mention rno-mir-3584-1
(8 sentences)

Sequence

21 reads, 5 reads per million, 21 experiments
guagagcugggcGGGAGGAGUCCAGGAGGCgggagcugccgcggucugguaGCCCGCAUCUCUGGAUCCCcgcagccugca
((((.((((.(.((((....(((((((.((((..(((((((.....))))))))))).)).)))))))))).)))))))).

Structure
-    a    g c    GGAG     -  G    ga       c 
 guag gcug g GGGA    UCCAG GA GCgg  gcugccg g
 |||| |||| | ||||    ||||| || ||||  ||||||| g
 cguc cgac c CCCU    AGGUC CU CGCC  CGauggu u
a    -    g -    ----     U  A    --       c 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr1: 267672833-267672913 [-]

Database links

Mature rno-miR-3584-5p

Accession MIMAT0017875
Description Rattus norvegicus rno-miR-3584-5p mature miRNA
Sequence 13 - GGGAGGAGUCCAGGAGGC - 30
Evidence experimental
SOLiD [1]

Mature rno-miR-3584-3p

Accession MIMAT0017876
Description Rattus norvegicus rno-miR-3584-3p mature miRNA
Sequence 52 - GCCCGCAUCUCUGGAUCCC - 70
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249