Stem-loop rno-mir-3596c

Accession

MI0015459

Description

Rattus norvegicus rno-mir-3596c precursor miRNA

Gene family

MIPF0001194; mir-3596

Literature search

3 open access papers mention rno-mir-3596c
(3 sentences)

Sequence

496319 reads, 0 reads per million, 496 experiments

ccccuuccagugcagggcgcagccuggggaaagcuaggaggccguauagugaucuccucgggugucuuccucaACUAUACAACCUCCUACCUCAgcccggggggcgcggcagguggg
.(((..((..(((...((((..((((((...((.(((((((..((((((((((.((....)).))).......)))))))..))))))).))...))))))..)))).))))).)))

Structure

c   uu  ag   agg    ag      gaa  c       cc       -------   c  c 
 ccc  cc  ugc   gcgc  ccuggg   ag uaggagg  guauagu       gau uc u
 |||  ||  |||   ||||  ||||||   || |||||||  |||||||       ||| ||  
 ggg  gg  acg   cgcg  gggccc   UC AUCCUCC  CAUAUCA       cug gg c
-   -u  --   --g    gg      gAC  C       AA       acuccuu   u  g 

Annotation confidence Not enough data

Genome context

chr1: 59704372-59704488 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from rno-mir-3596c

Mature rno-miR-3596c

• Accession: MIMAT0017877
• Description: Rattus norvegicus rno-miR-3596c mature miRNA
• Sequence: 74 - ACUAUACAACCUCCUACCUCA - 94
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249