miRBase entry: rno-mir-219b

Stem-loop rno-mir-219b


Accession
MI0015462
Description
Rattus norvegicus rno-mir-219b precursor miRNA
Gene family
MIPF0000044; mir-219

Literature search
26 open access papers mention rno-mir-219b
(233 sentences)

Sequence

204825 reads, 9 reads per million, 362 experiments
agaccggagcucaaccacAGAUGUCCAGCCACAAUUCUCGguuggccgcagacucguacaagaauugcguuuggacaaucaguggugaagccccugaguu
.....((.(((..(((((.(((((((((.(.((((((((((((.......))).))....))))))).).)))))).))).)))))..))).))......

Structure
-agacc  a   ca     A   -      C A       ----  -   gg 
      gg gcu  accac GAU GUCCAG C CAAUUCU    CG guu  c
      || |||  ||||| ||| |||||| | |||||||    || |||  c
      cc cga  uggug cua cagguu g guuaaga    gc cag  g
uugagu  c   ag     a   a      u c       acau  u   ac 


Annotation confidence High
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Genome context
chr3: 8407427-8407526 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from rno-mir-219b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-219b

Accession MIMAT0017882
Description Rattus norvegicus rno-miR-219b mature miRNA
Sequence 19 - AGAUGUCCAGCCACAAUUCUCG - 40
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249