miRBase entry: rno-mir-3596a

Stem-loop rno-mir-3596a


Accession
MI0015465
Description
Rattus norvegicus rno-mir-3596a precursor miRNA
Gene family
MIPF0001194; mir-3596

Literature search
1 open access papers mention rno-mir-3596a
(1 sentences)

Sequence

3803802 reads, 0 reads per million, 513 experiments
guugcuuugugcaagucccaaggaaagcuaggaggcuguacaguuaucucccuuguuguaacucuaAACUAUACAACCUACUACCUCAgccugggagcaugccgucacaguggc
((((((.((.(((.((((((.((..((.(((.(((.((((.((((.....................)))).)))).))).))).))...))))))).).)))...)).))))))

Structure
      u  --u   a -     a  -aa  c   g   c    c    aucucccuu 
guugcu ug   gca g uccca gg   ag uag agg ugua aguu         g
|||||| ||   ||| | ||||| ||   || ||| ||| |||| ||||         u
cgguga ac   cgu c agggu cc   UC AUC UCC ACAU UCAA         u
      c  ugc   a g     -  gAC  C   A   A    A    aucucaaug 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
chr8: 45753254-45753367 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-3596a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-3596a

Accession MIMAT0017886
Description Rattus norvegicus rno-miR-3596a mature miRNA
Sequence 67 - AACUAUACAACCUACUACCUCA - 88
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249