Stem-loop rno-mir-3589

Accession

MI0015467

Description

Rattus norvegicus rno-mir-3589 precursor miRNA

Sequence

uccacgaacuuggugauacuccagaGAGGAAACCAGCAAGUGUUGACgcuaaccuggcagaaacaucaauacuuccuggcucccccacugggugcaucaauuuacuacugga
((((.(((.((((((.(((.((((.(.((...((((.((((((((((((((...)))).).....))))))))).))))...)).).))))))))))))).)).)...))))

Structure

    --c -  c      a   u    a A  AAA    C         ----- -    a 
ucca   g aa uuggug uac ccag G GG   CCAG AAGUGUUGA     C gcua  
||||   | || |||||| ||| |||| | ||   |||| |||||||||     | |||| c
aggu   c uu aacuac gug gguc c cc   gguc uucauaacu     g cggu  
    cau a  u      -   -    a c  cuc    c         acaaa a    c 

Annotation confidence Not enough data

Genome context

chrX: 143516992-143517103 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-3589

Mature rno-miR-3589

• Accession: MIMAT0017888
• Description: Rattus norvegicus rno-miR-3589 mature miRNA
• Sequence: 26 - GAGGAAACCAGCAAGUGUUGAC - 47
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249