Stem-loop rno-mir-122b

Accession

MI0015471

Description

Rattus norvegicus rno-mir-122b precursor miRNA

Gene family

MIPF0000095; mir-122

Sequence

1243426 reads, 1 reads per million, 293 experiments

guagacggauagccuagcaguagcuguuuagugugaugauggcguuugauguuuuggacacaAACACCAUUGUCACACUCCAgagcucugcuaaggagagucuguaggc
....((((((..((((((((.((((.(..(((((((((((((.(((((.((((...))))))))).)))))))))))))..).))))))))).)))...))))))....

Structure

guag      -ag   -     u    g uu             c     a    u 
    acggau   ccu agcag agcu u  agugugaugaugg guuug uguu  
    ||||||   ||| ||||| |||| |  ||||||||||||| ||||| |||| u
    ugucug   gga ucguc ucga A  UCACACUGUUACC CAAac acag  
cgga      aga   a     -    g CC             A     -    g 

Annotation confidence Not enough data

Genome context

chr18: 60755272-60755380 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from rno-mir-122b

Mature rno-miR-122b

• Accession: MIMAT0017893
• Description: Rattus norvegicus rno-miR-122b mature miRNA
• Sequence: 63 - AACACCAUUGUCACACUCCA - 82
• Evidence: experimental ; SOLiD [1]

References

1. PubMed ID: 20403161
   Small RNA expression and strain specificity in the rat
   Linsen SE, de Wit E, de Bruijn E, Cuppen E
   BMC Genomics (2010) 11:249