miRBase entry: rno-mir-344b-1

Stem-loop rno-mir-344b-1


Accession
MI0015472
Description
Rattus norvegicus rno-mir-344b-1 precursor miRNA
Gene family
MIPF0000267; mir-344

Literature search
8 open access papers mention rno-mir-344b-1
(36 sentences)

Sequence

15102 reads, 73 reads per million, 155 experiments
agagaccugaucAGUCAGGCUGCUGGUUAUAUUCcaggacuucucugguccugGAUAUAACCAAAGCCCGACUGUuaaauaaaaguaagaaugugucu
.......(((.(((((.((((..(((((((((.((((((((.....))))))))))))))))).)))).)))))))).....................

Structure
--------------agagacc   u     A    GC         U        u 
                     uga cAGUC GGCU  UGGUUAUAU Ccaggacu c
                     ||| ||||| ||||  ||||||||| |||||||| u
                     auU GUCAG CCGA  ACCAAUAUA Gguccugg c
ucuguguaagaaugaaaauaa   -     C    -A         -        u 


Annotation confidence High
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Genome context
chr1: 121193138-121193235 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from rno-mir-344b-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature rno-miR-344b-5p

Accession MIMAT0017811
Description Rattus norvegicus rno-miR-344b-5p mature miRNA
Sequence 13 - AGUCAGGCUGCUGGUUAUAUUC - 34
Evidence experimental
SOLiD [1]

Mature rno-miR-344b-1-3p

Accession MIMAT0017894
Description Rattus norvegicus rno-miR-344b-1-3p mature miRNA
Sequence 54 - GAUAUAACCAAAGCCCGACUGU - 75
Evidence experimental
SOLiD [1]

References

  1. PubMed ID: 20403161
    Small RNA expression and strain specificity in the rat
    Linsen SE, de Wit E, de Bruijn E, Cuppen E
    BMC Genomics (2010) 11:249