Stem-loop sequence rno-mir-344b-1

Accession

MI0015472 (change log)

Description

Rattus norvegicus miR-344b-1 stem-loop

Gene family

MIPF0000267; mir-344

Literature search

8 open access papers mention rno-mir-344b-1
(36 sentences)

Stem-loop

   ag    - --------------ugau     a    gc         u        u 
5'   agac c                  caguc ggcu  ugguuauau ccaggacu c
     |||| |                  ||||| ||||  ||||||||| |||||||| u
3'   ucug g                  gucag ccga  accaauaua gguccugg c
   --    u uaagaaugaaaauaaauu     c    -a         -        u 

Deep sequencing

18070 reads, 24.1 reads per million, 166 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr1: 121193138-121193235 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from rno-mir-344b-1

• rno-mir-344b-3: chr1: 121201252-121201322 [-]
• rno-mir-344b-1: chr1: 121193138-121193235 [-]
• rno-mir-344b-2: chr1: 121185891-121185961 [-]

Database links

• EntrezGene:Mir344b-1
• miRBase Tracker:MI0015472

Mature sequence rno-miR-344b-5p

• Accession: MIMAT0017811
• Sequence: 13 - agucaggcugcugguuauauuc - 34
• Deep sequencing: 4129 reads, 84 experiments
• Evidence: experimental; SOLiD [1]

Mature sequence rno-miR-344b-1-3p

• Accession: MIMAT0017894
• Sequence: 54 - gauauaaccaaagcccgacugu - 75
• Deep sequencing: 16677 reads, 159 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-344b-1-3p
  • miRDB:rno-miR-344b-1-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).