Stem-loop sequence rno-mir-3594

Accession

MI0015475 (change log)

Description

Rattus norvegicus miR-3594 stem-loop

Literature search

1 open access papers mention rno-mir-3594
(1 sentences)

Stem-loop

   g   -g   cca        - a       ca  g 
5'  gca  agc   gggcagag c gugugaa  gc c
    |||  |||   |||||||| | |||||||  ||  
3'  ugu  ucg   cccgucuc g cacacuu  ug u
   -   ga   ---        c c       -c  u 

Deep sequencing

1055 reads, 0 reads per million, 223 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Rnor_6.0; GCA_000001895.4): chr10: 109244637-109244701 [-]
• Overlapping transcripts:

  sense

  ENSRNOT00000005977 ; Azi1-201; exon 23

Clustered miRNAs

< 10kb from rno-mir-3594

• rno-mir-3562: chr10: 109246744-109246855 [-]
• rno-mir-3594: chr10: 109244637-109244701 [-]

Database links

• EntrezGene:Mir3594
• miRBase Tracker:MI0015475

Mature sequence rno-miR-3594-5p

• Accession: MIMAT0017898
• Sequence: 8 - cccagggcagagcagugugaa - 28
• Deep sequencing: 454 reads, 147 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3594-5p
  • miRDB:rno-miR-3594-5p

Mature sequence rno-miR-3594-3p

• Accession: MIMAT0017899
• Sequence: 42 - cacaccgccucugcccgcuagu - 63
• Deep sequencing: 601 reads, 173 experiments
• Evidence: experimental; SOLiD [1]
• Predicted targets:
  • TargetScanVert:rno-miR-3594-3p
  • miRDB:rno-miR-3594-3p

References

1. PMID:20403161 "Small RNA expression and strain specificity in the rat" Linsen SE, de Wit E, de Bruijn E, Cuppen E BMC Genomics. 11:249(2010).