miRBase entry: cin-mir-9

Stem-loop cin-mir-9


Accession
MI0015482
Description
Ciona intestinalis cin-mir-9 precursor miRNA

Literature search
2 open access papers mention cin-mir-9
(3 sentences)

Sequence

44 reads, 19 reads per million, 2 experiments
UCUUUGGUUAUCCAGUUUGAugccacacacugcaccggacuaaaugaccaaagu
.((((((((((..((((((.(((........))).))))))..)))))))))).

Structure
U          CC      A   cac 
 CUUUGGUUAU  AGUUUG ugc   a
 ||||||||||  |||||| |||    
 gaaaccagua  ucaggc acg   c
u          aa      c   uca 


Annotation confidence Not enough data
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Genome context
5q: 5965526-5965579 [-]

Database links

Mature cin-miR-9-5p

Accession MIMAT0016396
Description Ciona intestinalis cin-miR-9-5p mature miRNA
Sequence 1 - UCUUUGGUUAUCCAGUUUGA - 20
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39