miRBase entry: cin-mir-125

Stem-loop cin-mir-125


Accession
MI0015487
Description
Ciona intestinalis cin-mir-125 precursor miRNA


Sequence

313 reads, 119 reads per million, 2 experiments
UCCCUGAGACCCUAAAACGUGagacgguuucACGUAUUCGGCUCUCAGU
...((((((.((.((.((((((((...)))))))).)).)).)))))).

Structure
UCC      C  U  A        c 
   CUGAGA CC AA ACGUGaga  
   |||||| || || |||||||| g
   GACUCU GG UU UGCAcuuu  
--U      C  C  A        g 


Annotation confidence Not enough data
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Genome context
10p: 1217517-1217565 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from cin-mir-125
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-125-5p

Accession MIMAT0016405
Description Ciona intestinalis cin-miR-125-5p mature miRNA
Sequence 1 - UCCCUGAGACCCUAAAACGUG - 21
Evidence experimental
Illumina [1]

Mature cin-miR-125-3p

Accession MIMAT0016406
Description Ciona intestinalis cin-miR-125-3p mature miRNA
Sequence 32 - ACGUAUUCGGCUCUCAGU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39