miRBase entry: cin-mir-4220

Stem-loop cin-mir-4220


Accession
MI0015494
Description
Ciona intestinalis cin-mir-4220 precursor miRNA


Sequence

6801 reads, 2366 reads per million, 2 experiments
UAGUGCAAUUUGUUGUAGCUUGcuguuaauucaAGCUCAAUUCAAUUGCACUG
((((((((((.((((.((((((.........))))))))))..))))))))))

Structure
          -U    U      cug 
UAGUGCAAUU  GUUG AGCUUG   u
||||||||||  |||| ||||||   u
GUCACGUUAA  UAAC UCGAac   a
          CU    -      uua 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_1385: 6649-6701 [-]

Database links

Mature cin-miR-4220-5p

Accession MIMAT0016419
Description Ciona intestinalis cin-miR-4220-5p mature miRNA
Sequence 1 - UAGUGCAAUUUGUUGUAGCUUG - 22
Evidence experimental
Illumina [1]

Mature cin-miR-4220-3p

Accession MIMAT0016420
Description Ciona intestinalis cin-miR-4220-3p mature miRNA
Sequence 34 - AGCUCAAUUCAAUUGCACUG - 53
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39