miRBase entry: cin-mir-132-2

Stem-loop cin-mir-132-2


Accession
MI0015497
Description
Ciona intestinalis cin-mir-132-2 precursor miRNA

Literature search
1 open access papers mention cin-mir-132-2
(1 sentences)

Sequence

32 reads, 11 reads per million, 2 experiments
UAUGGCUUUUACAUUCCUGUGUguauauuaaugcaguacacacaguauguugccaug
((((((....((((..((((((((((.........)))))))))).)))).))))))

Structure
      UUUU    UC          auu 
UAUGGC    ACAU  CUGUGUguau   a
||||||    ||||  ||||||||||   a
guaccg    ugua  gacacacaug   u
      ---u    -u          acg 


Annotation confidence Not enough data
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Genome context
scaffold_92: 102853-102909 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-132-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-132-5p

Accession MIMAT0016425
Description Ciona intestinalis cin-miR-132-5p mature miRNA
Sequence 1 - UAUGGCUUUUACAUUCCUGUGU - 22
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39