miRBase entry: cin-mir-4000c

Stem-loop cin-mir-4000c


Accession
MI0015498
Description
Ciona intestinalis cin-mir-4000c precursor miRNA


Sequence

36431 reads, 11627 reads per million, 2 experiments
UGAAACUUGCGUGGAACGGGccacucugccagGCCGUUGUAAACAUGUUUCG
.(((((.((..((.(((((.((.........))))))).))..)).))))).

Structure
U     U  CG  G     G  acu 
 GAAAC UG  UG AACGG cc   c
 ||||| ||  || ||||| ||   u
 CUUUG AC  AU UUGCC Gg   g
G     U  AA  G     -  acc 


Annotation confidence Not enough data
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Genome context
7q: 5402053-5402104 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from cin-mir-4000c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000c-5p

Accession MIMAT0016426
Description Ciona intestinalis cin-miR-4000c-5p mature miRNA
Sequence 1 - UGAAACUUGCGUGGAACGGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000c-3p

Accession MIMAT0016427
Description Ciona intestinalis cin-miR-4000c-3p mature miRNA
Sequence 33 - GCCGUUGUAAACAUGUUUCG - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39