miRBase entry: cin-mir-4000b-2

Stem-loop cin-mir-4000b-2


Accession
MI0015508
Description
Ciona intestinalis cin-mir-4000b-2 precursor miRNA
Gene family
MIPF0000867; mir-4000


Sequence

105880 reads, 34131 reads per million, 2 experiments
UGAAACUUGCAGGAACGGGCcuugucccaacaaGUCUUUUUCAACAGGUUUC
.((((((((..((((.((((.((((....)))))))).))))..))))))))

Structure
U        CA    C    c    c 
 GAAACUUG  GGAA GGGC uugu c
 ||||||||  |||| |||| ||||  
 CUUUGGAC  CUUU UCUG aaca c
-        AA    U    -    a 


Annotation confidence Not enough data
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Genome context
7q: 5401574-5401625 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from cin-mir-4000b-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4000b-5p

Accession MIMAT0016432
Description Ciona intestinalis cin-miR-4000b-5p mature miRNA
Sequence 1 - UGAAACUUGCAGGAACGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4000b-2-3p

Accession MIMAT0016965
Description Ciona intestinalis cin-miR-4000b-2-3p mature miRNA
Sequence 34 - GUCUUUUUCAACAGGUUUC - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39