miRBase entry: cin-mir-4001a-1

Stem-loop cin-mir-4001a-1


Accession
MI0015510
Description
Ciona intestinalis cin-mir-4001a-1 precursor miRNA


Sequence

12025 reads, 3985 reads per million, 2 experiments
UGGAACUUAUACGAACAGGCugcuuuguacucgGUCACUUCGCUUAAGUUUA
..(((((((..((((..(((((.........)))))..))))..))))))).

Structure
UG       UA    CA     cuu 
  GAACUUA  CGAA  GGCug   u
  |||||||  ||||  |||||   g
  UUUGAAU  GCUU  CUGgc   u
-A       UC    CA     uca 


Annotation confidence Not enough data
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Genome context
7q: 5401442-5401493 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from cin-mir-4001a-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4001a-5p

Accession MIMAT0016444
Description Ciona intestinalis cin-miR-4001a-5p mature miRNA
Sequence 1 - UGGAACUUAUACGAACAGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4001a-1-3p

Accession MIMAT0016445
Description Ciona intestinalis cin-miR-4001a-1-3p mature miRNA
Sequence 34 - GUCACUUCGCUUAAGUUUA - 52
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39