miRBase entry: cin-mir-4001a-2

Stem-loop cin-mir-4001a-2


Accession
MI0015513
Description
Ciona intestinalis cin-mir-4001a-2 precursor miRNA


Sequence

12033 reads, 3983 reads per million, 2 experiments
UGGAACUUAUACGAACAGGCugugcuguucaGCCAAUUCGUACAAGUUCAA
..((((((.((((((..(((((.......)))))..)))))).))))))..

Structure
UG      A      CA     ug 
  GAACUU UACGAA  GGCug  c
  |||||| ||||||  |||||  u
  CUUGAA AUGCUU  CCGac  g
AA      C      AA     uu 


Annotation confidence Not enough data
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Genome context
7q: 5401049-5401099 [-]
Clustered miRNAs
14 other miRNAs are < 10 kb from cin-mir-4001a-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4001a-5p

Accession MIMAT0016444
Description Ciona intestinalis cin-miR-4001a-5p mature miRNA
Sequence 1 - UGGAACUUAUACGAACAGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4001a-2-3p

Accession MIMAT0016974
Description Ciona intestinalis cin-miR-4001a-2-3p mature miRNA
Sequence 32 - GCCAAUUCGUACAAGUUCAA - 51
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39