miRBase entry: cin-mir-4001c

Stem-loop cin-mir-4001c


Accession
MI0015514
Description
Ciona intestinalis cin-mir-4001c precursor miRNA


Sequence

78533 reads, 28671 reads per million, 2 experiments
CGGAACUUUCCAAGGAACAGgcuuaaugcauauagucggCCUGUUGCUGGGAAUUCCCA
.((((.((((((.(.((((((((..............)))))))).)))))))))))..

Structure
-C    C      A G        uaaugc 
  GGAA UUUCCA G AACAGgcu      a
  |||| |||||| | ||||||||       
  CCUU AAGGGU C UUGUCCgg      u
AC    -      - G        cugaua 


Annotation confidence High
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Genome context
3p: 1538302-1538360 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4001c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4001c-5p

Accession MIMAT0016450
Description Ciona intestinalis cin-miR-4001c-5p mature miRNA
Sequence 1 - CGGAACUUUCCAAGGAACAG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4001c-3p

Accession MIMAT0016451
Description Ciona intestinalis cin-miR-4001c-3p mature miRNA
Sequence 40 - CCUGUUGCUGGGAAUUCCCA - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39