miRBase entry: cin-mir-4001e

Stem-loop cin-mir-4001e


Accession
MI0015516
Description
Ciona intestinalis cin-mir-4001e precursor miRNA


Sequence

9739 reads, 3182 reads per million, 2 experiments
UGGAACUUAUUUUGAACAGGcuguauaaaacAGCUGAUCAUAUAAGUUU
..((((((((..(((.(((.((((.....))))))).))).))))))))

Structure
UG        UU   A   G    a 
  GAACUUAU  UGA CAG cugu u
  ||||||||  ||| ||| |||| a
  UUUGAAUA  ACU GUC GAca a
--        -U   A   -    a 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
7q: 5413168-5413216 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4001e
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4001e-5p

Accession MIMAT0016454
Description Ciona intestinalis cin-miR-4001e-5p mature miRNA
Sequence 1 - UGGAACUUAUUUUGAACAGG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4001e-3p

Accession MIMAT0016455
Description Ciona intestinalis cin-miR-4001e-3p mature miRNA
Sequence 32 - AGCUGAUCAUAUAAGUUU - 49
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39