miRBase entry: cin-mir-4001f

Stem-loop cin-mir-4001f


Accession
MI0015517
Description
Ciona intestinalis cin-mir-4001f precursor miRNA


Sequence

51768 reads, 19644 reads per million, 2 experiments
UGGAACUUACUAAUGAACAGgcuuguguacagcuuagcacuauuuucgaauguuggugcuagcucguugauauaaacagCCUGUUGUAAGUAAGCUCCA
((((.((((((....(((((((((((((.(((((((((((((...........)))))))))...)))))))))...))))))))...)))))).))))

Structure
    A      AAUG        ---     a    ---         uuuu 
UGGA CUUACU    AACAGgcu   ugugu cagc   uuagcacua    c
|||| ||||||    ||||||||   ||||| ||||   |||||||||    g
ACCU GAAUGA    UUGUCCga   auaua guug   gaucguggu    a
    C      -AUG        caa     -    cuc         ugua 


Annotation confidence High
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Genome context
3p: 1537068-1537166 [+]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4001f
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4001f-5p

Accession MIMAT0016456
Description Ciona intestinalis cin-miR-4001f-5p mature miRNA
Sequence 1 - UGGAACUUACUAAUGAACAG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4001f-3p

Accession MIMAT0016457
Description Ciona intestinalis cin-miR-4001f-3p mature miRNA
Sequence 80 - CCUGUUGUAAGUAAGCUCCA - 99
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39