miRBase entry: cin-mir-4003c

Stem-loop cin-mir-4003c


Accession
MI0015524
Description
Ciona intestinalis cin-mir-4003c precursor miRNA


Sequence

30 reads, 13 reads per million, 2 experiments
UGAGUUGGUUAUCAUUGUUGcaauguaaguaacagUAACGAUGUUAGUCAAUGCA
((.((((((((.(((((((((..(((.....)))))))))))).)))))))).))

Structure
  A        U         aa   a 
UG GUUGGUUA CAUUGUUGc  ugu a
|| |||||||| |||||||||  ||| g
AC UAACUGAU GUAGCAAUg  aca u
  G        U         --   a 


Annotation confidence Not enough data
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Genome context
7q: 6151685-6151739 [-]
Clustered miRNAs
8 other miRNAs are < 10 kb from cin-mir-4003c
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4003c-5p

Accession MIMAT0016465
Description Ciona intestinalis cin-miR-4003c-5p mature miRNA
Sequence 1 - UGAGUUGGUUAUCAUUGUUG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4003c-3p

Accession MIMAT0016466
Description Ciona intestinalis cin-miR-4003c-3p mature miRNA
Sequence 36 - UAACGAUGUUAGUCAAUGCA - 55
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39