miRBase entry: cin-mir-4004

Stem-loop cin-mir-4004


Accession
MI0015530
Description
Ciona intestinalis cin-mir-4004 precursor miRNA


Sequence

1 reads, 1 reads per million, 1 experiments
GUGAGUUUGUUGUAUUGUGGUccauggcugucacuuauauacuacaacucaa
.((((((.((.(((((((((((...))))).)).....)))).)))))))).

Structure
G      U  U    -----  -     c 
 UGAGUU GU GUAU     UG UGGUc  
 |||||| || ||||     || ||||| a
 acucaa ca caua     ac gucgg  
a      -  u    uauuc  u     u 


Annotation confidence Not enough data
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Genome context
1q: 7635858-7635909 [-]

Database links

Mature cin-miR-4004-5p

Accession MIMAT0016471
Description Ciona intestinalis cin-miR-4004-5p mature miRNA
Sequence 1 - GUGAGUUUGUUGUAUUGUGGU - 21
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39