miRBase entry: cin-mir-4006d

Stem-loop cin-mir-4006d


Accession
MI0015533
Description
Ciona intestinalis cin-mir-4006d precursor miRNA


Sequence

21535 reads, 7082 reads per million, 2 experiments
UGGAACAUACAGGUAAGGGCugcugucaucgcagUCUUUAACUGGGUGUUCAAA
..((((((.(((.((((((((((.......)))))))))).))).))))))...

Structure
-UG      A   G          ug 
   GAACAU CAG UAAGGGCugc  u
   |||||| ||| ||||||||||  c
   CUUGUG GUC AUUUCUgacg  a
AAA      G   A          cu 


Annotation confidence High
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Genome context
7q: 5413757-5413810 [-]
Clustered miRNAs
12 other miRNAs are < 10 kb from cin-mir-4006d
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4006d-5p

Accession MIMAT0016476
Description Ciona intestinalis cin-miR-4006d-5p mature miRNA
Sequence 1 - UGGAACAUACAGGUAAGGGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4006d-3p

Accession MIMAT0016477
Description Ciona intestinalis cin-miR-4006d-3p mature miRNA
Sequence 35 - UCUUUAACUGGGUGUUCAAA - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39