miRBase entry: cin-mir-4012-2

Stem-loop cin-mir-4012-2


Accession
MI0015556
Description
Ciona intestinalis cin-mir-4012-2 precursor miRNA
Gene family
MIPF0000964; mir-4012


Sequence

5 reads, 3 reads per million, 2 experiments
AAGCUUAUGUUCAUGUAUGCuguguguauauaugugguacAGCAUUAUGUAUGUGAGCU
.(((((((((.((((.((((((((..(((....))).)))))))))))).)))))))))

Structure
A         U    U        ug   a 
 AGCUUAUGU CAUG AUGCugug  uau u
 ||||||||| |||| ||||||||  |||  
 UCGAGUGUA GUAU UACGAcau  gug a
-         U    -        -g   u 


Annotation confidence Not enough data
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Genome context
scaffold_67: 366261-366319 [-]
Clustered miRNAs
3 other miRNAs are < 10 kb from cin-mir-4012-2
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4012-5p

Accession MIMAT0016512
Description Ciona intestinalis cin-miR-4012-5p mature miRNA
Sequence 1 - AAGCUUAUGUUCAUGUAUGC - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4012-3p

Accession MIMAT0016513
Description Ciona intestinalis cin-miR-4012-3p mature miRNA
Sequence 41 - AGCAUUAUGUAUGUGAGCU - 59
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39