miRBase entry: cin-mir-4013a

Stem-loop cin-mir-4013a


Accession
MI0015557
Description
Ciona intestinalis cin-mir-4013a precursor miRNA


Sequence

8 reads, 5 reads per million, 2 experiments
AGACUUGUAAUAGCAGCAUGcgucgguuaaaccgUAGGCUGCUAAUGCAAGCCC
...((((((.(((((((.((((..........)))).))))))).))))))...

Structure
AGA      A       A    ucgg 
   CUUGUA UAGCAGC UGcg    u
   |||||| ||||||| ||||     
   GAACGU AUCGUCG AUgc    u
CCC      A       G    caaa 


Annotation confidence Not enough data
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Genome context
scaffold_44: 845403-845456 [+]

Database links

Mature cin-miR-4013a-5p

Accession MIMAT0016514
Description Ciona intestinalis cin-miR-4013a-5p mature miRNA
Sequence 1 - AGACUUGUAAUAGCAGCAUG - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4013a-3p

Accession MIMAT0016515
Description Ciona intestinalis cin-miR-4013a-3p mature miRNA
Sequence 35 - UAGGCUGCUAAUGCAAGCCC - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39