miRBase entry: cin-mir-4016-1

Stem-loop cin-mir-4016-1


Accession
MI0015563
Description
Ciona intestinalis cin-mir-4016-1 precursor miRNA


Sequence

18 reads, 6 reads per million, 2 experiments
ucaaacuuauuuucaugauuauagaagagaaaugauuauaggaagagaccuucugucaguuuuuUGUUCUGUGAUCUUAAAGG
................((((((((((.(((((((((...(((......)))...))))..))))).)))))))))).......

Structure
ucaaacuuauuuucau          g     --    uau   aa 
                gauuauagaa agaaa  ugau   agg  g
                |||||||||| |||||  ||||   |||   
                CUAGUGUCUU Uuuuu  acug   ucc  a
---------GGAAAUU          G     ug    ucu   ag 


Annotation confidence Not enough data
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Genome context
scaffold_3782: 881-963 [+]

Database links

Mature cin-miR-4016

Accession MIMAT0016522
Description Ciona intestinalis cin-miR-4016 mature miRNA
Sequence 65 - UGUUCUGUGAUCUUAAAGG - 83
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39