miRBase entry: cin-mir-4021

Stem-loop cin-mir-4021


Accession
MI0015572
Description
Ciona intestinalis cin-mir-4021 precursor miRNA


Sequence

12 reads, 7 reads per million, 2 experiments
GUACGUACGUCAUAAUAAAAuauugugaggucguaauAAAGUAUUGUGACGUCGUUA
..(((.(((((((((((...(((((((....)))))))...))))))))))))))..

Structure
GU   U           AAA       a 
  ACG ACGUCAUAAUA   uauugug g
  ||| |||||||||||   |||||||  
  UGC UGCAGUGUUAU   Auaaugc g
AU   -           GAA       u 


Annotation confidence Not enough data
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Genome context
scaffold_89: 466265-466321 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from cin-mir-4021
Name Accession Chromosome Start End Strand Confidence




Database links

Mature cin-miR-4021-5p

Accession MIMAT0016535
Description Ciona intestinalis cin-miR-4021-5p mature miRNA
Sequence 1 - GUACGUACGUCAUAAUAAAA - 20
Evidence experimental
Illumina [1]

Mature cin-miR-4021-3p

Accession MIMAT0016536
Description Ciona intestinalis cin-miR-4021-3p mature miRNA
Sequence 38 - AAAGUAUUGUGACGUCGUUA - 57
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39