miRBase entry: cin-mir-4028

Stem-loop cin-mir-4028


Accession
MI0015579
Description
Ciona intestinalis cin-mir-4028 precursor miRNA


Sequence

ugcaacccagcacuuguuaauauauuguuagauaUUAAUGAUGUUGUUGUUGCA
((((((.(((((.((((((((((........)))))))))))))))..))))))

Structure
      -c     c          auu 
ugcaac  cagca uuguuaauau   g
||||||  ||||| ||||||||||    
ACGUUG  GUUGU AGUAAUUaua   u
      UU     -          gau 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
scaffold_156: 31120-31173 [-]

Database links

Mature cin-miR-4028-3p

Accession MIMAT0016546
Description Ciona intestinalis cin-miR-4028-3p mature miRNA
Sequence 35 - UUAAUGAUGUUGUUGUUGCA - 54
Evidence experimental
Illumina [1]

References

  1. PubMed ID: 20370911
    miRTRAP, a computational method for the systematic identification of miRNAs from high throughput sequencing data
    Hendrix D, Levine M, Shi W
    Genome Biol (2010) 11:R39